Analysis 9 - Getting a closer look at the clusters from the clusters from basic some WT only.
Purpose
This analysis is based off of lcmSOM_analysis4_072914.Rmd, where the original dataset was made. The top 25% of co-efficent of variation.
Questions
- What type of gene co-expression patterns are found in this data?
- Is there any cluster that is enriched in genes from the curated leaf gene list?
- Are there GO categories that are enriched in the clusters?
- If there are GO categories, what are the genes that are represented?
Caveats
- While the standard deviation of expression of each gene in each tissue were from the reps were calculated, this was not used when creating the self organized map.
Analysis Set-up
Required Libraries
library(VennDiagram)
library(ggplot2)
library(reshape)
library(kohonen)
library(goseq)
library(GO.db)
library(knitr)
source("./clusterFunctions.R")Upload that dataset:
genes25 <- read.csv("../data/analysis4.top25.csv")
genes25 <- genes25[,c(2,9:14)]scale_data <- as.matrix(t(scale(t(genes25[c(2:7)]))))
pca <- prcomp(scale_data, scale=TRUE)
summary(pca) ## Importance of components:
## PC1 PC2 PC3 PC4 PC5 PC6
## Standard deviation 1.325 1.119 1.105 0.970 0.912 2.02e-15
## Proportion of Variance 0.293 0.209 0.204 0.157 0.138 0.00e+00
## Cumulative Proportion 0.293 0.501 0.705 0.862 1.000 1.00e+00pca.scores <- data.frame(pca$x)
data.val <- cbind(genes25, scale_data, pca.scores) Visualizing the PCA
p <- ggplot(data.val, aes(PC1, PC2))
p + geom_point()
Self Organizing Map - (6,6), large
#subset only the scaled gene expression values
set.seed(6)
som <- som(data=scale_data, somgrid(6,6,"hexagonal")) # This is where you change the size of the map
summary(som)## som map of size 6x6 with a hexagonal topology.
## Training data included; dimension is 4618 by 6
## Mean distance to the closest unit in the map: 0.6737Look at the SOM results
plot(som, type = "codes")
plot(som, type = "counts")
plot(som, type="dist.neighbours")
som$data <- data.frame(som$data) #changed to dataframe to extract column names easier.
data.val2 <- cbind(data.val,som$unit.classif,som$distances)
#fix to one regex
data.val2$gene <- gsub("^(.*)[.].*", "\\1", data.val2$gene)
data.val2$gene <- gsub("^(.*)[.].*", "\\1", data.val2$gene)Upload the gene expression list.
geneList1 <- read.csv("../../../06diffGeneExp/analysis/indvGenes/yasuCuratedGenes/pnas.1402835111.sd06.csv")
#isolate the genes
genesOfInterest <- geneList1[,c(1,3)]
colnames(genesOfInterest) <- c("gene", "name")
names(genesOfInterest) #check## [1] "gene" "name"#This is a ridiculas around assigning if a gene is a curated gene!
#Figure out more elegent way.
data.val2$curated <- match(data.val2$gene, genesOfInterest$gene)
data.val2$curated <- gsub("[[:digit:]]+", "yes", data.val2$curated)
data.val2$curated[is.na(data.val2$curated)] <- "no"Visualize the major clusters. Here are the leaf curated genes in PC space.
head(data.val2)## gene wtambr wtaother wtbmbr wtbother wtcmbr wtcother
## 1 Solyc00g005060 3.495e-01 0.4027 1.2847 1.388e-17 0.7016 6.511
## 2 Solyc00g005070 1.719e+01 4.5236 12.6456 3.462e+00 4.1808 83.519
## 3 Solyc00g005430 4.008e-02 0.8329 0.4097 1.358e+00 1.4743 0.946
## 4 Solyc00g005840 1.975e+01 14.0743 11.4830 8.351e+01 15.8112 13.882
## 5 Solyc00g005880 1.571e+00 2.1333 2.9694 2.811e+00 1.9558 4.966
## 6 Solyc00g006470 2.456e+03 605.8620 108.0947 3.605e+02 499.4475 409.566
## wtambr wtaother wtbmbr wtbother wtcmbr wtcother PC1 PC2
## 1 -0.4822 -0.46066 -0.1039 -0.62353 -0.3398 2.0100 0.8529 -1.6794
## 2 -0.1196 -0.52622 -0.2656 -0.56030 -0.5372 2.0089 0.8180 -1.8799
## 3 -1.4636 -0.01919 -0.7901 0.93674 1.1493 0.1869 -1.0080 0.8140
## 4 -0.2374 -0.43921 -0.5314 2.03149 -0.3774 -0.4460 -1.3230 0.2193
## 5 -0.9589 -0.49543 0.1936 0.06336 -0.6416 1.8390 0.3961 -1.6693
## 6 2.0022 -0.15634 -0.7372 -0.44270 -0.2805 -0.3854 0.6217 0.1852
## PC3 PC4 PC5 PC6 som$unit.classif som$distances
## 1 -0.7115 -0.10700 0.01075 2.220e-16 8 0.13932
## 2 -0.2741 0.02502 -0.04351 -2.220e-16 7 0.15509
## 3 -1.3876 1.14932 -0.09713 3.331e-16 10 0.32634
## 4 0.7110 1.10255 1.45429 1.610e-15 31 0.09767
## 5 -0.8672 -0.23448 0.90073 1.887e-15 8 0.89742
## 6 2.2867 0.39962 -0.66500 -2.942e-15 30 0.08093
## curated
## 1 no
## 2 no
## 3 no
## 4 no
## 5 no
## 6 nop <- ggplot(data.val2, aes(PC1, PC2, color = curated))
p + geom_point(size=I(2), alpha = 0.6) +
scale_colour_manual(values=c("#cccccc", "#33ff33")) +
theme_bw()
Visualize by Cluster
Read in data used for GO enrichment analysis.
geneLength <- read.csv("../../../07GO_enrichment/requisiteData/normalized_genes_length.csv")
cate <- read.table("../../../07GO_enrichment/requisiteData/melted.GOTable.txt",header=TRUE)for(i in 1:36){
print(i)
multiplot(clusterVis(i), clusterVis_PCA(i))
clusterVis_line(i)
##clusterGO(i)
y <- genesInClust(i, data.val2, annotation)
kable(y, format = "latex", booktabs = TRUE)
}## [1] 1## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 2## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 3## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 4## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 5## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 6## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 7## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 8## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 9## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 10## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 11## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 12## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 13## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 14## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 15## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 16## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 17## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 18## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 19## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 20## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 21## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 22## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 23## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 24## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 25## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 26## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 27## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 28## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 29## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 30## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 31## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 32## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 33## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 34## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 35## Using gene as id variables
## Using gene, curated as id variables## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}
## [1] 36## Using gene as id variables
## Using gene, curated as id variables
## [1] 125
##
## \begin{tabular}{lll}
## \toprule
## ITAG & AGI & gene_name\\
## \midrule
## Solyc00g014800 & NA & NA\\
## Solyc00g027120 & NA & NA\\
## Solyc00g036520 & NA & NA\\
## Solyc00g052540 & NA & NA\\
## Solyc00g166690 & NA & NA\\
## \addlinespace
## Solyc00g313030 & NA & NA\\
## Solyc01g010210 & NA & NA\\
## Solyc01g016630 & NA & NA\\
## Solyc01g056770 & NA & NA\\
## Solyc01g057530 & NA & NA\\
## \addlinespace
## Solyc01g058430 & NA & NA\\
## Solyc01g066510 & AT5G49150 & Encodes a transmembrane domain containing protein expressed in sperm cells.\\
## Solyc01g081020 & AT4G37380 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc01g081290 & NA & NA\\
## Solyc01g097380 & AT1G60680 & A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.\\
## \addlinespace
## Solyc01g097680 & NA & NA\\
## Solyc01g097690 & NA & NA\\
## Solyc01g106670 & NA & NA\\
## Solyc01g107960 & NA & NA\\
## Solyc01g109420 & AT4G36750 & quinone reductase family protein; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254)\\
## \addlinespace
## Solyc01g111480 & NA & NA\\
## Solyc01g111770 & AT4G38500 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852)\\
## Solyc02g025080 & NA & NA\\
## Solyc02g055330 & NA & NA\\
## Solyc02g063170 & NA & NA\\
## \addlinespace
## Solyc02g065520 & NA & NA\\
## Solyc02g067200 & NA & NA\\
## Solyc02g068840 & NA & NA\\
## Solyc02g069170 & NA & NA\\
## Solyc02g080350 & AT1G77170 & pentatricopeptide (PPR) repeat-containing protein; similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81261.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)\\
## \addlinespace
## Solyc02g081130 & AT4G22140 & DNA binding; similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)\\
## Solyc02g090730 & AT1G14870 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35525.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os03g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051787.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461)\\
## Solyc03g044030 & NA & NA\\
## Solyc03g044360 & NA & NA\\
## Solyc03g053030 & NA & NA\\
## \addlinespace
## Solyc03g062860 & NA & NA\\
## Solyc03g064010 & AT3G57830 & leucine-rich repeat transmembrane protein kinase, putative; similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)\\
## Solyc03g078740 & NA & NA\\
## Solyc03g082420 & AT4G27670 & chloroplast located small heat shock protein.\\
## Solyc03g082770 & NA & NA\\
## \addlinespace
## Solyc03g083740 & NA & NA\\
## Solyc03g093370 & NA & NA\\
## Solyc03g114570 & NA & NA\\
## Solyc03g120950 & NA & NA\\
## Solyc03g123540 & AT1G54050 & 17.4 kDa class III heat shock protein (HSP17.4-CIII); similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)\\
## \addlinespace
## Solyc04g005770 & AT2G02750 & pentatricopeptide (PPR) repeat-containing protein; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77488.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc04g014940 & NA & NA\\
## Solyc04g015310 & NA & NA\\
## Solyc04g039710 & NA & NA\\
## Solyc04g076690 & NA & NA\\
## \addlinespace
## Solyc04g078100 & NA & NA\\
## Solyc04g080170 & AT1G45160 & kinase; similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)\\
## Solyc05g009970 & NA & NA\\
## Solyc05g010080 & NA & NA\\
## Solyc05g017870 & NA & NA\\
## \addlinespace
## Solyc05g039950 & NA & NA\\
## Solyc05g041600 & NA & NA\\
## Solyc05g050550 & NA & NA\\
## Solyc06g008800 & NA & NA\\
## Solyc06g036290 & AT5G52640 & Arabidopsis thaliana 81 kDA heat shock protein. Sequence analysis revealed that the exons are interrupted by the presence of three introns of 315, 83, and 88 base pairs. 88% similar to HSP81-2 at amino acid level.\\
## \addlinespace
## Solyc06g068700 & AT5G61790 & calnexin 1 (CNX1); Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin homolog (GB:AAA17742.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE80216.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)\\
## Solyc06g071380 & NA & NA\\
## Solyc06g073850 & NA & NA\\
## Solyc06g076420 & NA & NA\\
## Solyc06g076590 & NA & NA\\
## \addlinespace
## Solyc06g076810 & NA & NA\\
## Solyc07g015770 & NA & NA\\
## Solyc07g017550 & NA & NA\\
## Solyc07g017830 & NA & NA\\
## Solyc07g020780 & NA & NA\\
## \addlinespace
## Solyc07g021560 & NA & NA\\
## Solyc07g026760 & NA & NA\\
## Solyc07g032820 & NA & NA\\
## Solyc07g052870 & NA & NA\\
## Solyc07g054790 & NA & NA\\
## \addlinespace
## Solyc07g055170 & NA & NA\\
## Solyc07g063020 & NA & NA\\
## Solyc07g064690 & AT1G29040 & similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1)\\
## Solyc07g065060 & NA & NA\\
## Solyc07g065720 & NA & NA\\
## \addlinespace
## Solyc07g066500 & NA & NA\\
## Solyc08g007420 & AT4G17260 & L-lactate dehydrogenase, putative; similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557)\\
## Solyc08g014390 & NA & NA\\
## Solyc08g023640 & AT4G21065 & binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01510.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G59720.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to putative pentatricopeptide repeat-containing protein [Ipomoea trifida] (GB:AAS79604.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc08g075210 & NA & NA\\
## \addlinespace
## Solyc08g076010 & NA & NA\\
## Solyc08g076330 & NA & NA\\
## Solyc08g078080 & NA & NA\\
## Solyc09g008110 & NA & NA\\
## Solyc09g009140 & AT5G06680 & Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.\\
## \addlinespace
## Solyc09g014620 & NA & NA\\
## Solyc09g042380 & NA & NA\\
## Solyc09g059490 & NA & NA\\
## Solyc09g075170 & AT3G62890 & binding; similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## Solyc09g082690 & AT3G22840 & Encodes an early light-inducible protein.\\
## \addlinespace
## Solyc10g008880 & AT1G28520 & similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105)\\
## Solyc10g038050 & NA & NA\\
## Solyc10g038070 & NA & NA\\
## Solyc10g039300 & NA & NA\\
## Solyc10g049740 & AT1G05120 & SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)\\
## \addlinespace
## Solyc10g049960 & NA & NA\\
## Solyc10g054680 & NA & NA\\
## Solyc10g078800 & NA & NA\\
## Solyc10g081570 & NA & NA\\
## Solyc11g005240 & NA & NA\\
## \addlinespace
## Solyc11g008020 & AT5G03530 & ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding; similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to RAB1X [Lotus japonicus] (GB:CAA98163.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)\\
## Solyc11g008060 & NA & NA\\
## Solyc11g008380 & AT3G10370 & mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.\\
## Solyc11g010220 & NA & NA\\
## Solyc11g011340 & AT4G39330 & mannitol dehydrogenase, putative; Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)\\
## \addlinespace
## Solyc11g030910 & NA & NA\\
## Solyc11g044680 & NA & NA\\
## Solyc11g065020 & NA & NA\\
## Solyc11g065650 & NA & NA\\
## Solyc11g071370 & AT1G05750 & PDE247 (PIGMENT DEFECTIVE 247); binding; similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)\\
## \addlinespace
## Solyc11g071740 & NA & NA\\
## Solyc11g071760 & NA & NA\\
## Solyc12g008610 & NA & NA\\
## Solyc12g010420 & NA & NA\\
## Solyc12g036870 & NA & NA\\
## \addlinespace
## Solyc12g040330 & NA & NA\\
## Solyc12g042630 & NA & NA\\
## Solyc12g056200 & AT4G11350 & similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)\\
## Solyc12g056890 & NA & NA\\
## Solyc12g095870 & AT4G32830 & Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.\\
## \bottomrule
## \end{tabular}Conclusions
I need to write something that looks at the statistical difference in tissue between each genotype. In order to do that I have to subset based on tissue and do a t-test? Do I need to correct for multiple testing? Ideally what information do I want from these clusters?
I want clusters that are enriched in leaf genes. Maybe I could just color special for leaf genes?
Significant differences between genotype at each tissue.
How much intersect is there between my genes and the curated gene list?
length(intersect(data.val2$gene, genesOfInterest$gene) ) #77## [1] 77Only 51? Is that right? Double check. Are there only 51 leaf curated genes differentially expressed? Maybe I need to be looking at a larger subset. 25% co-efficient of variation. In lcmSOM_analysis4_072914.Rmd, I looked into this a bit more.
#From lcmSOM_analysis4_072914.Rmd
intersect(genesOfInterest$gene, countData$X) #There are only 217 leaf curated genes in the normalized read counts.
intersect(genesOfInterest$gene, data.val.allGenes25$gene) # There are only 77 which are in the top 25%
#There are 51 which overlap with the DE genes. I have to make a decision between